Scaffold Ga0272429_1000306

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000306
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109585
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (52.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F005901	Metagenome	386	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100030630	F005901	N/A	LIDELFEHLKEIYDELNKNRKCRREYNALRQADKSFNVFYFDFMKLFSYLEYDDCTLMNDLQNKINNRLQNALSVCSENFTSLIRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVVPNKCATSLSVTTSIINYVKLTISSISESARSSIICYICKTLDHLFKNCSQLNKIDTSASRAFISRLHEIVISKNKENEKMSFENSEAKN
Ga0272429_100030631	F000597	N/A	MKDVLISSTTSRSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKLLTLIKAKLIQEFDDHYAKKLITHAIYLNLTVQDHTIDTASMLITQLNQHQMILEKT
Ga0272429_100030634	F032102	N/A	MKIADLKKNISESIYKQVLETNRIDENCTLLREAIARDETQYEDIKLKNCRTQNEILYHDSQL
Ga0272429_100030636	F036036	N/A	MLVSLIHHLFSCFDQSFTSEDQCLVHLFRYILDSINLQAFASAFILDDVRVEAHTRMKALVYEEEDQEDD
Ga0272429_100030656	F008668	GAG	MMKFNDNFNIFLITSMILFYFNKEFHSRMSFNSNITDYKTTCKRLEVRKANNIVIQMKELLNFDHQQLKKMKLIIEVQINKHRRNIIYEVND
Ga0272429_100030660	F006206	N/A	LKENYFEKSFLIDTHLIFQNQSFSLRLLIDSDSIVYTIIHFNLVNKVCEKLKIQSISLAKEKLIRDYDEKISKKIITHKILFNLIIKSHKKLTVSMLIVDIDYHEVILSKL
Ga0272429_100030667	F001951	N/A	MIIIMKLKFIDSSKDEKERNEDTVKIIVTKMMIFELKELLVDAEMLLTLMNKIMMKTKQD
Ga0272429_100030669	F102181	N/A	MKEIMIIVHVHALYQTLFSCIQSIFVSFIFKYIKKLLKFRSDENNDKVHREINDEERLIVQDLCDNLNYHCKKLRIQFYIN