Scaffold Ga0272429_1000296

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000296
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113198
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (47.86%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017767	Metagenome	238	Y
F036036	Metagenome	170	Y
F044226	Metagenome	154	Y
F048017	Metagenome	148	Y
F061401	Metagenome	131	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100029614	F005901	N/A	VISRLEDDAAEHIFARHRHDASHSYISIDELFEHLKEIYDELNKNRKCRREYNALRQADKSFNVFYFNFMKLFSYLEYNDCTLMNNLQNKINNRLQNNLSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCIVIIKVTVVSDKRVTSLSVTTSIIDYVKSTISSISESARSSIICYICKTLNHLFKNCSQLNKINTSASHAFTLRLHEIIISKNKKNKKMSFENSEAKN
Ga0272429_100029615	F017767	N/A	MKDVLISSTMSMSDDSFASESLTIECILSSNEISYSLKSLIDIKAADYSFIDEVIAQIVC
Ga0272429_10002962	F044226	GAG	MMKFNDNFNIFSITSMILFYFNKEFHSRMSFDSDTTDYKTTCERLEARKADDIVI
Ga0272429_100029620	F013598	N/A	MNFIINLFDSSEYNAILMIICKLSKERHYISCIIDDKDVIVKKTAEMLIQ
Ga0272429_100029621	F036036	N/A	MLVSLIHHLFSCFDQSFTSEDQCLVHLFRYILDLIDLQAFASAFILNDVRVEAYTRMKDLVHEEESQEDD
Ga0272429_100029623	F061401	N/A	LNNDQRVIREIKNKIKRVDNLSKTIFHKATIVTQSVDHLKSDQLKSRDVILTSVKEADILVESCFICHKSDHSFKECLDRFTRINVVNNEYDCFDFDSNFN
Ga0272429_10002965	F087980	N/A	LINDERAVEQFAQSVIENSVEIFRVMQELQNQVQQHDVITSSSFIVFNSSVYIKLNSQSLAMIARIVAQILNNQSFFIVYFSANSVAVFIAFKFKKLSDIFEYERNKDQLNA
Ga0272429_100029689	F061401	N/A	LNNDQRVIREIKNKIKRVNDLSKTIFHRATVVIQSIDHSKSDQLKSHDAILTSVKEADILVESCFICHKSDHSSKECFDQSTRINAVNNEYDRFDFDSNFDSKN
Ga0272429_100029690	F006206	GAG	LCKLDEILLKENYFEKSFLIDTHLISQNRSFSLRSLIDSDSVIYTIIHSNLVDKVCKKLKIQSISLTKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLITDIDHHEVILSKL
Ga0272429_100029693	F048017	GAG	MKNKQLSRRQVNYLNILSKFNFQIIFRSDKMNTKVDALIRMSLANVSESAQRLEDRFQTILILDRVDVLFIESKANLYQRVQMINQTDELCSEYRQAINENKLKFHITKLKNCEILDDVLFRKDLL
Ga0272429_100029694	F008668	N/A	MTFFYFNKEFHLRMSFDSDTTDYETTRKRLEVRKADDIVIQMKELLNFDHQQLKKTKLIIEVQINKHRRDVIYEVDD