NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000169

Scaffold Ga0272429_1000169


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000169 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)172055
Total Scaffold Genes179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)105 (58.66%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F021452Metagenome218Y
F040408Metagenome161Y
F048019Metagenome148Y
F069514Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000169167F069514GAGMIKFVDNNALFSVIFSISFFLNKDFHSHINFELDVIEYESFRERLQTTKVENISEHMNKTLKFVRESLVKT
Ga0272429_1000169171F001253GAGVTFIKGAMKDVLISSTMSRSNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLITHAIYSNLTVQDHMKRFVSMLITRLDQHQMILEKT
Ga0272429_1000169176F021452N/AVTESNILIFCFISMSDDSFDFKSFTVDIILNSLEKIFRSLTLIDIEVTDMTFIDESLMSKLCERFDIQSISLSKSKLIRSYDEISDRKSITHALYTSIMIQEHKNEMMSLLITCLDQHKIIIENL
Ga0272429_1000169178F040408N/AVHDRNSLFKVMYDYESIFDIHIKNDAMKEEVSAAKERVELLQDVQNTLTK
Ga0272429_10001693F048019N/AMNEHAFELFFTQAFVKALQDESIMYALVMINVVEELIIEHQVKAINNVMSCITNALEMQTLLIELKEYKNVFLTESINKLLLHKDHDHAIKITAESLYESLYNLSNTELATLRQYLDDVLAKE
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