Scaffold Ga0272429_1000162

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000162
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 174346
• Total Scaffold Genes: 205
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (44.39%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F005901	Metagenome	386	Y
F017941	Metagenome	237	Y
F021896	Metagenome	216	Y
F036036	Metagenome	170	Y
F055319	Metagenome	138	Y
F074204	Metagenome	119	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000162102	F074204	N/A	MIVFYILCQAQFKVFTLALIDSEVFAYVFMNKFFMQQHYLFLHQLIHFCRLQEFNDQITLINDITYVIEITIIFNEYIERLFFYVIELSQYFIIMSLS
Ga0272429_1000162116	F036036	N/A	MLVSLIHHLFSCFDQSFMSEDQCLVHLFRYILDLIDLQAFASAFILDDVRVEAHMGMKVLVHEEEDQEDD
Ga0272429_1000162118	F017941	N/A	MKIADLKKNISESIYKQILETNEIDENCTLLREAIAEDET
Ga0272429_1000162124	F005901	N/A	LHSYISIDELFEHLKEIYDELNKNRKCRHEYNTLRQADKSFNVFYFDFMKLFSYLKYNDCILLNDLQNKINNRLQNALSVCSKNFTSLTRLRIFLQDVNSKQRVNYQLCSERCTVIVKVTVVSDKRVTSLSVTISIIDYVKSIISSISESVRSSIICYICKTLDHLFKNCSQLNKIDTSASHAFILHLHEIIISKNKENEKMSFENSEAKN
Ga0272429_1000162198	F021896	N/A	MKNNLESEDFLKNVECNLTFLKSDKEYIFSDETSERDSYSTIIINESSIKFREI
Ga0272429_1000162202	F055319	N/A	MIEVRVKRLKLIDKMIYIQIFERDLVQRLNLFREQQDFFIYIDNVTVVNVHDMQSEELLI
Ga0272429_1000162203	F001951	GAG	MKFKFIDSSKNERERDEDTVETTVTKMMIFELKELLINAKMLLTLMNETMIKMKQD
Ga0272429_1000162205	F087980	N/A	MFSYVEISSNYSFVQIKLSHNLLIDDECAVKQFTQSMIENSVEIFRAMQELQNQVRQHDVITLFSFIIFSSSIYIKLNSQSLMMITQIITQILNNQSFFIIYLSANSVAVFIASRFKKLLDISEYEKNKD