Scaffold Ga0272429_1000151

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000151
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 180507
• Total Scaffold Genes: 223
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 120 (53.81%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008668	Metagenome	329	Y
F025887	Metagenome	199	Y
F032102	Metagenome	180	Y
F041516	Metagenome	159	Y
F065269	Metagenome	127	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000151200	F025887	N/A	MSDDSFNFKSFTVDVILSSLEKIFRFLALIDTEVIDMTFINESLMSKLCEHFNIQSILLSKLKLIQMYDEIFD
Ga0272429_1000151202	F008668	N/A	MILFYFNKEFHSRISFDSNTTDYETTCERLEARKADDIVIRMKELLNFDHQQLKKTKLIIEVQINKHRRNIIYEVDD
Ga0272429_1000151208	F032102	N/A	MKIADLKKNISESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNCRTQNEILYHDNQL
Ga0272429_1000151214	F081945	N/A	MSSHSLTEERFEEFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFAEMIILFVFYEI
Ga0272429_1000151216	F041516	N/A	MIQKVIHIHEAYNSSLRNYEIIHEKENLSDIEKMLHMSKESILVEDFNLHHFT
Ga0272429_1000151221	F065269	N/A	MTRSSKSASIAHYKLQNARRESLLLQNQTASEEEDMNASLNTEEENMNALLFNHEMIKISISTELNA