Scaffold Ga0272429_1000146

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000146
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 189581
• Total Scaffold Genes: 231
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (52.81%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021896	Metagenome	216	Y
F055319	Metagenome	138	Y
F071806	Metagenome	121	Y
F074204	Metagenome	119	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000146107	F001951	N/A	MMTMTKLRFIDSSRNEKERDEDTVETTVTEVMIFELKELLVDAEMFLTLTSETMMKTK
Ga0272429_1000146108	F055319	AGCAG	MIEVRMKRLRLVDKMICIQIFERDLAQRLDFFREQRDFFIYIDDVIVVDVHDTQSEELLI
Ga0272429_1000146109	F074204	N/A	MIVFCILRQAQSRVLVLALIDSEVSAYVFMNKFFAQQHHLLLHQLTHSRRLQEFDDQVALIDDITYVVKITMILDEHIERLFFYVTELSQYFIVMSLS
Ga0272429_1000146113	F021896	N/A	VTKNNLESEDFLKNVECNLTFLRSDKEYIFSDETSERDSYSTIVIDESSIEVREI
Ga0272429_1000146117	F071806	N/A	MKLQSQIIALNSVQLHLFSIISAFSQILALMNLEIEEFDVEDIKSQLNQDTLNLDEDSADTLTQTL
Ga0272429_1000146118	F021896	N/A	VTKNNLESENFLKNVECNLTFLRSDKEYIFSDEMSERDSYSTIVIDESSIEVREI
Ga0272429_1000146121	F074204	N/A	MIVFCILRQAQSKVLTLALIDSEVSAYVFMNKFFAQQHHLFLHQLIHSRRLREFDDQVALIDDIIHVVEITMILDEHIERLFFYVTELSQYFIVMSLS
Ga0272429_1000146122	F055319	AGCAG	MIEVRVKRLRLVDKMICIQISERDLAQRLNFSCEQRDFFIYIDDVTVVDVHDMQSEELLI
Ga0272429_1000146123	F001951	N/A	MIMTKLRFIDSSRNERERDEDTVETTVTEVIIFEFKELLVDAEMLLTLTNEMMMKMKQD
Ga0272429_1000146125	F087980	N/A	MKSSHNLSIDDERAVEQFAQSMIENSVEIFRAMRELQNQVRQHDVIISFSFIILNSSVYIELNSQSLATIAQIVAQILNNQSLFIVHFSANSVAVFIASRFKKLLDISEYERNKDRLNA