Scaffold Ga0272429_1000116

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000116
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 213903
• Total Scaffold Genes: 283
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 148 (52.30%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F013598	Metagenome	269	Y
F021896	Metagenome	216	Y
F032102	Metagenome	180	Y
F074204	Metagenome	119	Y
F087979	Metagenome	109	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000116100	F013598	N/A	MNFIINLSDSSEYNAILTIICRLLKKRHYISCIIDDEDITVKKTAEMLIQ
Ga0272429_1000116101	F032102	N/A	MKIADLKKNINESIYKQILKTNEIDENCTLLREAIARDETQCEDIKLKNCRVQNEILYHDNQL
Ga0272429_1000116106	F000597	N/A	MKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIICDQLQIEFLTLIKAKSIREFNDHYAKKLITHVIYSNLTVQDHIIDTAFMLITQLD
Ga0272429_1000116107	F003820	N/A	MKLFSYLEYDNHILMNDLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVVSDKCATSLSITTLIINYVKSTIFSISESARSSIICYICNIFDHMFKNCFQLNKIDTSASCAFTSRLHEIIISKNKENEKMSFENNEAKN
Ga0272429_1000116108	F087979	N/A	MKEKNESSTFIYMNQAKSRLNNSFIDLRLQKFMHMTEMIKTKFLKLN
Ga0272429_1000116202	F003820	N/A	MKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSKNFTFLSRLKKFLQDVNNKQRVNYQLRSERCTVIIKVTVVSDKCATLLSMITLIINYVKLTIFFISESARLSIICYICKTSSHLFKNCSQLNKIDTSAS
Ga0272429_1000116203	F000597	GAGG	VTFIKDAIKDVLISSTTSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDKVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDIASMLITRL
Ga0272429_1000116209	F013598	N/A	MNFIINLSDSSEYNAILTIICRLLKKKHYISCITDDEDITVEKTAEMLIQ
Ga0272429_100011692	F021896	N/A	VTKNNLESEDFLKNVECNLTFLKSDKEYIFSDKMSERNSYSTIVIDESFIEVREI
Ga0272429_100011695	F074204	N/A	MIVFCILHQAQSRVFILILIDSEIFAYVFMNKFFTQQHHLLLYQLTHSCRLQEFDDQVTLINDIIHVVKITMILNEHIEKLFFYVIELSQYFIIMSLS
Ga0272429_100011696	F102181	N/A	MKKIMIIIHVHALYQTLLSCIQSIFVFLIFKYVEKLLESRSDEDNDRVHKEVNNKKRLIIQNLCNNLSYHHKRLRIQLYIN