Scaffold Ga0272429_1000073

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000073
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 280769
• Total Scaffold Genes: 338
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 190 (56.21%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021452	Metagenome	218	Y
F021896	Metagenome	216	Y
F055319	Metagenome	138	Y
F065269	Metagenome	127	Y
F071806	Metagenome	121	Y
F087980	Metagenome	109	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000073215	F021896	N/A	MMKNNLESEDFLKSVECNLTFLRSDKEYIFSDEMSERDSYSTTIVIDKSFIEVREI
Ga0272429_1000073220	F055319	AGCAG	MIEVRMKRLRLVNKMICIQISERDLAQKLNFFREQQDFFIYIDDITVINIHDMQSEELLI
Ga0272429_1000073221	F001951	N/A	MTMMKFKFIDSSKDERERDEDTVKTTITKMMIFKLKELLVDAKTFLTLMNKTIMKTK
Ga0272429_1000073223	F087980	N/A	MIENSVEIFCVMHELQNQVRQHDVIISFSFIIFSSSIYIELNSQFLATIAQIITQILNNQSFLVVHFSANSVAVFIASKFEKLFDISEYEKNKD
Ga0272429_1000073229	F071806	N/A	MKLQSQIIILDSVQLHLFSIISAFLQILTFMNLEIEEFNVEDVKSQLDQDTLNLDEDSADTFTQTL
Ga0272429_1000073231	F021896	N/A	MMKNNLESEDFLKNVECNLTFLRSDKEYIFLDETSERNSYSTIVIDEFSIEVREI
Ga0272429_1000073236	F055319	AGCAG	MIEVRMKRLRLVNKMICIQISERDLAQKLDFSCRQRDFFIYIDDVIVIDIHDMQSEEFLI
Ga0272429_1000073237	F001951	N/A	MIMTKFRFIDSSRDERERDEDIVETTVTEMMIFELKELLVNAEMLLTLMNKTMMKTKRD
Ga0272429_1000073239	F102181	GAG	MIIVHVHALYQTLLSCIQSIFVLLIFKYVEKLLKSRSDDDSDRICKKMNDERRLIVQDLCDDLSYHCKKLRIQFYID
Ga0272429_1000073242	F065269	N/A	MTRSSESASIARYELQDARRESLLSQNRTASEEEDTNASLNTEEENTNALFFDHEMIKISISTELNA
Ga0272429_1000073244	F021452	N/A	MSDDSFDFKSFIIDIILSSLRKIFRFFTLIDTEVIDMTFIDESLMSELCECFDIQSISLSKSKLIQSYDEIFDRKLITYALYTLIMIQEHKNEMMFLLITHLDKHKIIIENL