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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000069 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 290905 |
| Total Scaffold Genes | 351 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 206 (58.69%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F006206 | Metagenome | 378 | Y |
| F008668 | Metagenome | 329 | Y |
| F021896 | Metagenome | 216 | Y |
| F061401 | Metagenome | 131 | Y |
| F074204 | Metagenome | 119 | Y |
| F102181 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_10000691 | F102181 | GAG | MIIIHLHALYQTLLSCIQSIFVLLIFKYVKKLLEFRSNDDSDRVRRKMNDEKRLIVQDLCNYLSYHYKKLRIQFYIN |
| Ga0272429_100006910 | F021896 | N/A | MTKNNFESEDFLKNVECNLTFLKSDKEYIFSDEMNEQSSYSTIVIDESFIEVREI |
| Ga0272429_1000069173 | F061401 | N/A | LNNDQRVIREIKNKIKRVDDLSKTIFHRATVVIQSVDHSKSDQLKSRDTILTSVKEADILVESCFICHKSGHSSKECFDRSTRINAVNNEYDRFDFDSNFDSKN |
| Ga0272429_1000069174 | F006206 | GAG | LCKLDEILSKENYFEKLFLIDAHLISQNRSFSLRSLIDSGSVIYTIIHSNLVDKVCEKLKIQSISLTKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKL |
| Ga0272429_1000069178 | F008668 | N/A | MIFFYFNKEFHSRMSFDSDTTDYETTRERLEVRKADDIVNRMKELLNFDRQQLKKTKLIIEVQINKHRRDIIYEVDD |
| Ga0272429_10000693 | F001951 | N/A | MIMMKFKFIDSSRNERERDEDTVEMTVTEMMIFELKELLVNAETFLTLMNKMMMKMK |
| Ga0272429_10000694 | F074204 | N/A | MIVFCILHQAQSKVLVLALIDNEVFVYVFMNKFFAQQHHLFLHQLTHSRRLQEFDDQVTLINDIIHVIEITVILNKHIERLFFYVIELSQYFIIMSLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |