Scaffold Ga0272429_1000043

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000043
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 363172
• Total Scaffold Genes: 376
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 108 (28.72%)
• Novel Protein Genes: 18
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Associated Families: 16

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F009377	Metagenome	318	Y
F021026	Metagenome	220	Y
F021216	Metagenome	219	Y
F042102	Metagenome	158	Y
F048019	Metagenome	148	Y
F050043	Metagenome	145	Y
F055318	Metagenome	138	Y
F057012	Metagenome	136	Y
F064254	Metagenome	128	Y
F086377	Metagenome	110	Y
F094622	Metagenome	105	Y
F094624	Metagenome	105	Y
F096306	Metagenome	104	Y
F096307	Metagenome	104	Y
F104135	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000043120	F048019	N/A	MRHACNSFNVNEHAFELFFAQAFMKALQDESTVYALVIINIVEELIIEHQVRAINNVMSRITNAFETQTLLVELKEYEDVFSTESADKLSLHEDHDHEIEIIAESSYESLYNLLNTELATLR
Ga0272429_1000043123	F042102	N/A	MLEDVNKINITLKIMQMHLQKENRNKNVIIHHLKVASSQQSTSISEDXFSKSIKLLNSSLFEDLLQNVDNXLSXMXNKLKINKNHFSIEELKIVYIESXVSKAAIKHIASCMQDIFLNSFLEVEEVLSMINKMYDDLNHHHTTQYQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLDDFQHKISSDLQRATLNEXITNLNKFINICMXVDVRLTELNTRSIIKASATQAACSVISTLTTQFTSSVSSXKKLRRLKLNSIQKELFKKKLCFKCKKSKHRAYDCLKMT
Ga0272429_1000043149	F021216	N/A	MKSRTKSNATRREHHELEKALKNHERSNDDHSNDILNEHTESILSCDIIEELNEREKK
Ga0272429_1000043152	F104135	N/A	MNQDINVTQQYVNASQRSNQMIXTFAAHLSILKHQLSLYSDEHKRTHLFIKLRSELRVIITNVQSISITXDALIDLVAQLKTNLRKEHILLSKXSXDENLHDQDKVNKKTHLKQKKSHXLIKLNFSSKTSSHASSCYSKNLFNIMCYMCNQKNHYFTDCKDEKIKNRLKESDASRVFIDSMSHMSHFKISRKDKLLMNASNHQEKNKKFSL
Ga0272429_1000043158	F064254	N/A	MQELYEFISFLFSLSFIXFFNDITAXNXFSMLIESIIXMIIVAALMISKSFFKFIMFSSYCIAFHSIFHLRHVNKMCLINIXSLSHLHIIIATSSTHLSCRNXLKSIFLMYNCVNNTLXDFAXFLCSHRCRCVIFDVKYXKXAALNLSFQTILHVYLICFCMNINLVITSMHXCSVSNKDKSCTSLIILFIASFSSTSACLITQCNFSVTS
Ga0272429_1000043159	F094622	N/A	MSISQHHFNTFKLKQRVYLNNNDSKENVMMIAMRINXELNKRLKELTLVITHHEELKELIARIKHFADVVTKNQKCHENIYKVYSDSQTSLKTVKAMISTKDQTCLQ
Ga0272429_1000043165	F021026	N/A	LIDSEVLTYVFMNKFFMQQHYFFLHQLTHSCRLQEFNDQVVLINDITHVVEITMILNEHNKKLFFYVIELSQYLIIMSLSXLHHHVININFEHNILILSFFFYLNHCCQSFIKIYDFNQQKENFLLEVNKVAFSQSCSQFAHKKQLSSQIILHSQEAIQSTDHSQEAI
Ga0272429_1000043167	F086377	N/A	MIQYFXNQRQRISILDCDNIQISIVHTKAKFFFEFLDEENRDDHLKVIDLNEIFA
Ga0272429_1000043174	F094624	N/A	MCKMLKINAKLSMIYHSEINDQIKKVNAVIKHYLXVFVNYMQNDXTKXLSEVEFIVNNKSSLITLTSLFLINLNQNSCLNFKSFESLLENLMFQAXNKLINVKKFIKKIKKLTEHLRDEMLITSIIYKFNVNLFHSCSYFKYFIEDKVXLNAHNLSIAHFAVKLNDHNVDFFKIKHVFKNNSLIIELNLSAFMKIYSIFHVILLNHITSDFLLS
Ga0272429_1000043216	F096306	GAG	MYDNCAVDSLIVDDDSNEERSCKDNSELYASMILFDIATLIATNVKIVFVESNDK
Ga0272429_1000043226	F002432	N/A	MXKSLCKXLRITASLFTVYHSEIDDQSKXVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFLITSMILFYFNKEFHSRMSFNSDMINYKTTHERLEARKADDIVIQMKELLNFDHQQLKKMKLIIEVQINKHRRNIIYEVNYXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKYLHSMFSSKLLQLYSEDFLSKQHLESLKSITIKDDEHXEINNIELQMLSRSNTVQSQMNRSR
Ga0272429_1000043294	F064254	N/A	MQELYESVSFLFLLSFIXFFNDITAXNXFSMLIKSIIXMIINVTLIISKSFLKFVMFFSHCIAFHSTFHLKHVNKMCLINIXSLSHLHVVVTISSTHLSCRNXLKSIFLMHNYINNALXDFAXFLCNHRCXCVIFDVRYQKXAALNFFFQTILHVCLIYFCMSVNLIITSVH
Ga0272429_1000043307	F050043	N/A	MIKIXSXLKKDEVEENEKLRRTERVINKSTIIIHSCLCSIVSTTSFTQKINNVYVLSTRHHCCHLHQLHITYTIYNVIYTHYNRRXIVIQSKVSLFLVFSQRFEDFYXELLEXINECTSSFIRINKDINYXDXEXTHLKEKTIVMMNXLIEVRSETKVKDXVKDQIXVSSETL
Ga0272429_1000043339	F064254	N/A	MQELYESVSSLFSLSFIXLFNDVTAXNXFNMLVESIIXMIVVTALMISKSFLKFVMFSSHCIAFHSTFHLKHVNKMCLINIQSLLHLHIVVTTLNIHLSCRNXLKSIFLMHSCVNNTLXNFTXFLYSHKCQCIIFDVKYXKXATLNLSFQTILHVYLIYFCMSINLVITSMHXCSVNYRNKLCASSIILFITSFSSTFACLIIQCNFSMTS
Ga0272429_1000043359	F009377	N/A	MTRSTESESVSIACYELXNAKRKSLLSQNXTASEEEDTNASLNTEEKNMNMLFFDHKMIKISISTELNAXINIHEADDLIVFIKYICQQHDIEIKIHNDMIQMLNDVNKINIKLKATQTTLNAVQMHLQKEMKKKSIIIHHLEVTSSRLSTLISKDRFSKSIKLSDSSLFEDSRQNVNNXLSXMXNKLKMNKNHFSIEEIKFAYVKSXVSETMIKHIVFRMRNTITNSFLEAEEILSIINKMYNNFN
Ga0272429_1000043361	F057012	N/A	MLDDSFDFKSFIVNIILSNLEKIFRFLILINIKVIDMTFINDSLISKLCECFDIQSISLFKLKSIRLYDKTLDQRFITHALYISVTIQEYKNEMMSLLITCLNQHKIIIDNLXLKRNQILINSANDXLISSSNIRTLKLIVSKASSQSAFHXLKSSEICKMKRKNLKSMSTIILKXTTNSKSVNRFIESTLIRKQST
Ga0272429_1000043369	F055318	N/A	MLRDDEALCIDHMQSFRDHTDFDNFNVHVTSNLHADEKIK
Ga0272429_1000043373	F096307	N/A	MLYIVVTQIDASIKKNVLKHKKDVDLKDVHDTKKCVYHRHLLITRNTKKCVCLENNRSXLEDARKEKKCXVISESNLNQI