NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000036

Scaffold Ga0272429_1000036


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000036 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)380396
Total Scaffold Genes477 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)256 (53.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F040408Metagenome161Y
F048019Metagenome148Y
F061402Metagenome131Y
F102179Metagenome101Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100003626F040408N/AMYDYKSIFNIYIKNDAMKEKVSAAKECIEMLQDVQNTLM
Ga0272429_100003632F021896N/AVTKNNLENEDFLKNVECNLTFLKSDKEYIFSDEMSERDNYSIIVINKSFIEVREI
Ga0272429_100003637F001951N/AMMIIMKFRFIDSSKDEKEKNEDIVETTVTEMMIFELKELLVNAKTFLTLTNEMMMKMKQD
Ga0272429_100003640F102181GAGMIIIHVHALYQTLLSCIQLIFVSLIFKYVEKLLESRSNKNSDRICREMNNKKRLIVQDLCNDLSYYCKRLRIQFYIN
Ga0272429_100003672F048019N/AMNEYAFKLFIAEDFAKALQDDFTMYAFVMINIVKKLIIEHQVKAMNNMMNCITNAFETQTLFIELKEYENVFSTESVDKLFLHENYDHAIKIIAKSSYKLLYNLLNTELVTLKVKT
Ga0272429_100003674F102179GAGMSVHNVSENMNTCSAMHVRSMLLRVMILTVQEMHLDEVHFLKNRIFQFESTTLKSTDVEMSTHKNHNVAEKQLNSVAETVDCKQLISHAFVRVLIIHEIIYNFDSKFIVELIKILQQEDEFTVELRTDEMMSI
Ga0272429_100003681F061402N/AMTEFINNNAISSLIEQSTFFLNKNFRSCMSFNLNSTQYEITQVRIEAIKANNIFKHIK
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