Scaffold Ga0272429_1000027

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000027
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 428726
• Total Scaffold Genes: 373
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 233 (62.47%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007459	Metagenome	350	Y
F010658	Metagenome	300	Y
F015284	Metagenome	255	Y
F015552	Metagenome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000027243	F015552	N/A	MTQLTLNAKISNIIKVTSFFVNYNKEFNLFEKEQKHLLAQLAIERVATLKKIYDNISKM
Ga0272429_1000027244	F007459	N/A	MYFSCSTMNFFLHAIICKYLINLLIITNIKSYLFSIARFVNLDNLIIKFIVTLSYNDLDN
Ga0272429_1000027245	F010658	N/A	MINFNAIDNFIIKALIDRETYFIRKKSNAYNFIIVDKNLLLARNEKVNKETKLLSITI
Ga0272429_1000027248	F015284	N/A	LFNYSIFKINKNKLLLANKYILNTILQILRDNKEEFLVKKEKLQISINRIDKYIKKYYNRLLQKYSKVIKIF
Ga0272429_1000027302	F015552	GAG	MTQLTLNAKVSNITKITLFFVNYNKEFNLFKKEQKHLLAQLVIKRIETLKKIYDNIFKM
Ga0272429_1000027303	F007459	N/A	MYFSCSTINFSLHAIICEYLISLLIIINIESCLSSIAKFVNLNNLIIKFIVTLFYNDSSN
Ga0272429_1000027304	F010658	N/A	MINFDAIDNFITRALIKREKYFIRRKSNAYNLVIINENSLLARNKKVNKETKPLLIAI
Ga0272429_1000027305	F015284	N/A	LFNYNILKINKNRLLLINKYKLNTILQILRDNKKEFLVKKEKLQIFIDKIDKYIKKYYNKLLQKHLKIIKIL