Scaffold Ga0272429_1000023

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000023
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 475384
• Total Scaffold Genes: 557
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 272 (48.83%)
• Novel Protein Genes: 18
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F006206	Metagenome	378	Y
F013598	Metagenome	269	Y
F021896	Metagenome	216	Y
F048019	Metagenome	148	Y
F055319	Metagenome	138	Y
F058565	Metagenome	134	Y
F081945	Metagenome	113	Y
F087980	Metagenome	109	Y
F089602	Metagenome	108	Y
F089603	Metagenome	108	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000023408	F089603	AGG	MYTDVLQIQKKIAEVETEIETTVIFMHELIKCSKATSISGKIIITKAKLQAIDDAIAMCSEKALKNSEI
Ga0272429_1000023419	F048019	N/A	VNEHAFELFFAQVFAKALQNESTVYALVIINVVKELIVEHQVKAMNNVMSCITNALETQTLLVELKEYEDIFSTESADKLSLHEDHDHAIEITAESSYELLYNLSNTELTTLRQYLDDVLAKE
Ga0272429_1000023445	F058565	N/A	MMMNCMNRSNVDLKMIASNIDSLQENKDAKLKCLCNDEENIANIINLLIKISTLEKEKSKDHS
Ga0272429_1000023451	F013598	N/A	MNFIIDLFDSSEYNAISTIICRLSKERHYISCIIDDEDITVKKTAEMLIQ
Ga0272429_1000023457	F000597	N/A	MSDDFFAFESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFNDHYVKNLITHVIYLNLTVQDHTIDTASMLIT
Ga0272429_1000023479	F021896	N/A	MMKNNLKSEDFLKNVECNLTFLKSDKKYIFSDEISERDNYFTIVINESFIEVCKI
Ga0272429_1000023481	F021896	N/A	VIKNNLESENFLKNVECNLTFLKSNKKYIFSHEMSERDSYSTIVINESFIKVHEI
Ga0272429_1000023483	F081945	N/A	MSSRLSTEECFEEFRNRFSQISDADSLKLRTKSSSAASFIHEDDESFAEMIILLMFYEI
Ga0272429_1000023485	F006206	GAG	LCKLDEILSKENYFEKSFLIDAHLIFQNQSFNLHSLINSDSVIYMIIHSNLVNKVCEKLRIQSISLTKEKLVRDYDEKISKKIITYKILLNLIIESHKKLTVSMLIADINHQEVILSKL
Ga0272429_1000023501	F021896	N/A	VTKNNLESENFLKNVECNLTFLRSDKEYIFSDEMSERDSYSTIVIDESFIKVREI
Ga0272429_1000023505	F055319	AGCAG	MIEVRVKRLKLVNKMICIQISERDLAQKLDFFREQRNFSIYIDNVTVVDIHDTQSEKLLI
Ga0272429_1000023506	F001951	N/A	MMTITKLKFINLLKNEKERDEDIVETTVTEMMIFELKKLLINAEMLLTLTNEMMMKMK
Ga0272429_1000023507	F089602	N/A	LNFLEVLSEKDDDLSEIIDIALQTVNQQEIFHQRTFFLLIEEIEIVNKAIHVLLQNFAKI
Ga0272429_1000023508	F087980	N/A	VIENSVEIFRAMQELQNQVRQHDVIILFSFIILNSSVYIKLNSQSFMMIVQIITQILNNQSSFVVHIFANSVAVFIASKFKKFLDISEYEKNKDQLNA
Ga0272429_1000023509	F001951	N/A	MMIMTKLKFIDSSRNEKEKDEDTVKTTVTKMMIFKLKKLLINAKMFLTLMNEMMTKMK
Ga0272429_1000023531	F055319	AGCAG	MIEVRMRRLKLVNKMICIQISERDLAQKLNFFCKQRDFFIYIDDVIVIDVHDMQSEKLLI
Ga0272429_1000023532	F001951	N/A	MMTIMKLRFIDSSRNEREKNEDTVEITVIEMMIFELKELLVNAEMLLTLMNEAIMKIKQD
Ga0272429_1000023551	F102181	GAG	MIIIHVHALYQTLLSCIQLIFVLLILKYVKKFLEFKNNEDSNRICREMNDEKRLIVQDLCNNLSYHHKKLRIQFYIN