Scaffold Ga0272429_1000002

Overview

Basic Information

• Taxon OID: 3300031449
• Scaffold ID: Ga0272429_1000002
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1079954
• Total Scaffold Genes: 955
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 567 (59.37%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.7
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007459	Metagenome	350	Y
F010658	Metagenome	300	Y
F015284	Metagenome	255	Y
F020636	Metagenome	222	Y
F100076	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000002146	F020636	N/A	MFITMFRRDFKNNLKNKIMRNNKFINDMFDFIEIIINFDNKLYKRIIKKQYD
Ga0272429_100000227	F100076	N/A	MHLDNAFVRYLCVIIFKLFLVIQIMRIFLKIENFDILTSFSIAWRVDRVESKNR
Ga0272429_1000002761	F010658	N/A	MIDFDAIDNFIIRALVERKEYSTQKKLDAYNLIIVYENSLLAKNEKVNKKTKLLSIAI
Ga0272429_1000002762	F015284	N/A	LFNYNILKVNKNELLLANKYELNATLRILKDNKKEFSIKKEKLQIFIDKIDEYIKKHYDKSLQRHSRMIKIL
Ga0272429_1000002763	F007459	N/A	MYSSCFAINFSLHAIICEYLISLSIIINIESYLSLVARFVNLSNLIIKFIVTLFHNNLDN
Ga0272429_100000291	F007459	N/A	MYLSCFAVNFSLHAIIYKYLISLLIITSIELYLFLIVKFVNLSNLVIKFIVTLSYNNLDN
Ga0272429_100000292	F015284	N/A	LFNYNILKINKDKLFLANKYELNTILQILRDNKKEFLIKKEKLQISIDKIDECIKKYDDKLLQKHLKVIKTLQLLRQHY
Ga0272429_1000002933	F015284	N/A	LFNYYILKINKNKLLLANKYKLNTILQIFRNNKEEFLIKKEKLQIYINKIDKYIKKYYNKLLQKHLRVIKIL