NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1275999

Scaffold Ga0272438_1275999


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1275999 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)633
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F009580Metagenome315Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_12759991F089602N/AMKDEXLSFIEISSEENDDLSEIIDIALQTVNQREIFHQRTFFLLIEEIVVINKAIHVL
Ga0272438_12759992F001951N/AMKLKFIDSSRNEKERDEDTVKTTVTEMMIFELKELLVDAETLLTLMNKMMMKTKQD
Ga0272438_12759993F009580N/ANLAQRLNFSCEQXDFFIYTDDVTVVDVHDTQSEELLIXAFFNNFAXMLQLAVVAQLSLVADFLDLRNDQNLILNDDNDEA
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