Scaffold Ga0272438_1026862

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1026862
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4406
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021026	Metagenome	220	Y
F080690	Metagenome	114	Y
F087979	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10268621	F021026	N/A	LKLFEFDSTFKDNHMIVFCILRQAQSKVFALVLIDSEVFAYVFMNKFFAQQHYFLLHQLIHSCRLQEFDDQVSLINDITHVIEITMILNEYIEKLFFYVTELNQYFIIMSLSXLHHHVIDVNFKHNILILSFFFCLNHCCSFLIKIYDLNQ
Ga0272438_10268622	F001951	N/A	MIMMKLKFIDSSRNEKERDEDTVKTTVTEMMIFESQELLVNTEMFLTLMNETMMKMK
Ga0272438_10268623	F080690	N/A	MKSLHNFLIDDEHVVKQFTSSMIENSVEIFHVMRKLQNQVRQHDVIISFSFIIFNSSIYIKLNSQSLAMIVQIIAQILNNKSLFVIHFFANSVAVFIAFKFKKLFNISEYEKNKDQLNAXKQSLIQRMNVNDDCYFSHRVKIIYVESXLIIDKKTHNLMNQYRVNDLYIIFIFADXXHKLLHCCNNSFKAEDAHLYLRETLKQGMNSFVDYYNLFYQKKECFLMKDFSLIDYLKRNVNYFIQVIIFFXRNLD
Ga0272438_10268624	F087979	N/A	MKEKNENSTFIYMNRAESRPDSKFIDLRLQKFMHMTEMIETELLKLN