Scaffold Ga0272438_1026384

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1026384
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4466
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F048017	Metagenome	148	Y
F055317	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10263841	F055317	N/A	KILNSLMFIDEKNFTXKNXSLDIQEKLAMNINIFSNELYKLSYINFQLTDDVVEVTQVRRNLNCDNFYLTVNELLKKLAQSFHDSDKKDNYHRKYINLIQELKKFSDFFNQFQQLYIYLKYQKNVLVIDLKNKINSRFXIFXTAQIKSLIKLSDIRNYLIRLNNEHKAVRKIKNKLLKCDDSKIIISKATIAVQSSALKSDXSKSRSAVLTNVKNADILVEICFVCHKSDHSFRECLNQFIKVNTVEKNYDCFKFGTESEFKSKN
Ga0272438_10263843	F048017	N/A	MKNKQLSRHQVNYLNILSKFNFQIIFKSGKMNTKVNALTXMFLANVSESAKRFEDCFQTILIFDRVNILPIDLKSSANSKSEVNLYQRVQLVNQMNEFCSEYRQAKNDNKLKLHSIKMKNCEIIDDVLFRKRLLXVLKNMHMKLLQEVHNQSFISHLDNKXTIDLVQRFYYXSDH
Ga0272438_10263844	F002432	GAG	MIEFSDNVNMFSIISMISFYFNKEFHSQMSFNSDTTDYKITHERIEARKADDIIIQMKELLNFNHQQLKKTKLIIEAQINKHRRDIIYKIDDQIXLSFRNIKIMRSCKNLKDKQLDFYSIIVKVKTFYHLHLFTSMKHIHLMFSSKILQLYSNDSLSDQHIESLRLITIKDEEHXKINNILKFRRYXDXMQYKVK