Scaffold Ga0272438_1012956

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1012956
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7462
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F021026	Metagenome	220	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10129561	F021026	N/A	MIVFCILHQAQSRVFAFALIDSEVFTYVFMNKFFVQQHHLLLHQLTHSCRLREFDDQVTLINDITHIVEITMILDEHIKKLFFYVIELSQYLIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHCCSSLVKIYDLNQQEESFSFKVNKVAFSQSRSQFTYKKQLSSXIIHKKQFNLQIIHKK
Ga0272438_10129562	F009580	AGCAG	MIEVRMRRLRLVDKMICIQISERDLTQRLNFSCKQRDFFIYTDDIIVVDVYNMQSEKLFIXAFFSNFAQMLQFAIVAQLSLVADFLDLRNDQNLILNDDNDKA
Ga0272438_10129563	F001951	N/A	MTMTKLKFIDSLRNERERDENTVETTVTKMMIFEFKKLLVNAKMFLTLMNKIMTKMK
Ga0272438_10129564	F094625	N/A	MKSLHNFLIDDERVVEQFTQSVIENSVEIFHIMRELQNQVQQHDVIISSSFIILSSSVYIKLNSQFLTMITQIIAQILNNQSLLIIHLSANSVIVIIAFRFKKLFDISEYERNKDRLNAXKQSLIQRMNVNDDHYFSHQVKIVYVESXFIIDKKTYNLMNQYXVNDLCIIFIFANX