NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1008458

Scaffold Ga0272438_1008458


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1008458 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10384
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F002432Metagenome559Y
F008735Metagenome328Y
F074204Metagenome119Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100845817F002432N/AMSFDSNTIDYETTHERLEARKANNIVIQMKELLNFDYQQLKKTKLIIEVQINKHRXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVNIFYHLRLSISMKHLHSMFSLKLLRSYSEDFLSEQHSESLRSITIKDDEHXKIDNILNFRRYQGXIQYKVKXTNLDRNDKXYYVDKEKFDDSEKVLNEFHKLYSNKSR
Ga0272438_10084585F008735N/AMKEIMIIVHIHALYQTLLSCIQSIFVLLIFRYVKKFLESKINEDNDRICKKMNNKRKLIIQDLCNDLSYYHKKLRIQLYIDXRTENDEQRXNDNIMLSNLILKLLHCTKDLNXIFNHTLSELFDSTLIVNQKIVKXLHLSKRVTRXDFNIXKCCRKCRSFIMSKTELN
Ga0272438_10084586F089602N/AMKDEXSSFIKISSEEDDNLSEIIDITLQTVNQREIFHQRIFFLLIEEIVIVNKVIHVLLQNFTKI
Ga0272438_10084587F001951N/AMMKFKFINSSRNEKERNKDIVETTVTKMMIFEFKELLVNAKMLLTLMNEMMIKMKQD
Ga0272438_10084589F074204N/AMIVFCILHQAQFKVLTLTLINSEIFIYVFMNKFFVQQHHFFLHQLTYSCKLQEFDDQVTLIDDITHVVEIIMILDEHIERLFFYVIELSQYFIIISLS
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