Scaffold Ga0272438_1006367

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1006367
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12867
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100636710	F009580	GAG	MIYIQISEHDLAQRLNFFHEQQNFFIYINDVTVVDVHDVQSEELFIXAFFNNFAQMLQFAVVAQLSLIANFLNFRNDQSFILNDDNNKA
Ga0272438_100636711	F001951	N/A	MIKVLSXMMIITKLKFIDSLRNEKEKDEDIVEMTVTEMMILELKELLVNTKIFLTFANKTIMKTKRD
Ga0272438_100636713	F094625	N/A	LIKSLVQFSLXHYERFTLSATFSYVEISSSYSFTQMKSFYNFSIDDKHAVEQFTQSMIENSVEIFHIMQKLQNQVXQHDVITSFSFIIFSSLIYIKLNSQFLAVIVQIIAQILNNQSFFIIHFSANFVTVIIASRFKKLLDISEYERNKDXLNAXEQSLIQHINVNDDHYFFHQAKIIYVESRLIID
Ga0272438_10063672	F010214	GAG	VSVLFVYDASSLPCSSLTVFYTTMFRSDPRFEDERRFLCIRDARGCNVRRAAFSCSMIAIHCAEKHVMKERRTRXEGRVXLYXVTLSFSXFGLCHVDVEXTVSIGVRSQSFDVWLXSMKENAFXSFSXALDFPRR