Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1005567 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1005567 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14242
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (91.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14242

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (91.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008598	Metagenome	330	Y
F034417	Metagenome	174	Y
F042663	Metagenome	157	Y
F058564	Metagenome	134	Y
F074201	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100556719	F008598	GGA	MVSDIIHTGVTNWPLSVTLTTDHVTADAAGPLADALHAAGVMVEQHAFLPVRGEEQHPWGVLLLATSGPPRPLAQLVAPASAPAGVTPTLTAALEVGERPAPATLQLKADGVFVSVRGQDLFDITQALDALPAQFARLDTRREERRLVYSEGVWRIDP
Ga0272438_10055674	F042663	AGGA	MTPQAIPAPHIAASIPSIPPRTAIALDDGDVSVTTTFRPRDPIGATEVVASLALPDDAALLNLLDATITRLIAYRDAYQQAMDADPAPVRAPLPLPVPWYAW
Ga0272438_10055677	F058564	AGGAGG	MTPSGYILYGHPLCVPCFDGDYHLTADGLAHAHDGQGRAADVAPIHAGDPDDGAPCAGCGQPLAAPPEAGIVWTCPSCGGDDLRVLYDERRACRVTTLNDTGDPADAAPWPSYAGDECVDIDPGSFAFHCDACNTHDITPRKGGRINDLGHQQAA
Ga0272438_10055678	F034417	AGGAGG	MTWAISKPRDAWLAQAKAAWAALEPKAPEGSQVRDLAAIDQHNFALLIEALCALTPGQVSQELQDLAGLRPVGEVLGMPDRGDARIDAGGDAGDW
Ga0272438_10055679	F074201	AGGAGG	MNTVDITPTPEACRQIARLFRVQQADAEALAVRAARALDDLDGCADVDLAPWDRALLAAAFAALSEAEDARAFKMREGLEALGPYADADDGEGSDDAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1005567

Overview

Ecosystem & Geography

Associated Families

Sequences