Scaffold Ga0272438_1005510

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1005510
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14344
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035571	Metagenome	171	Y
F075493	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10055104	F035571	N/A	MFKXTCSELVYVSVSKVLMLTLLNASATXCKVXFXSVSSLHSLFNNLSFLSRXCQTDASNAISDLITAEYTCLTFVKITSHVKTLRXLSVSIFVTXFIFICXRCAFHCSFMFSCIFKTHTFDFNLITEFSIYMLVIMLNLFNFLVKCVSLYFSDANVASXVQAHFMQTLCALLNVLQISSVNLS
Ga0272438_10055105	F075493	N/A	MRSVQTMHEYMLCHLMTSFAIISQAIHVXNISRMQINIQIYAFDFDVHCKNTFCFLKIIIHLYHLIAQMQSLCXDCVDVCNAFSVLFSSLILLIFVILHYCDAIACXNHCEEENASFASXLYLRIFLNEDIQKYYFLDDEXARNDVINFHQMNVY