Scaffold Ga0272438_1005362

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1005362
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14636
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter sulfurreducens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074199	Metagenome	119	Y
F080689	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100536210	F074199	AGGAGG	MERRDLTRLIDWIEAPLFLACGATGAGLQERVWWGFAVGVAALAAVLLLVWSDRRALAHGAEPSMGLDDYRRLVRLLWWAAGMVLAGSIVTVVVRALVSAATGVGQ
Ga0272438_100536215	F080689	AGAAGG	MGTLWIVALALGALYLLTLALMGSYRLGRRQRRDEVIIALMDDDAFVRDMGALDRVRDQIRERNTRYAKWRHQEARVAQATGATGTAGPGAGHE