Scaffold Ga0272438_1004950

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1004950
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15453
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008169	Metagenome	337	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F080690	Metagenome	114	Y
F086377	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100495010	F001951	N/A	MTKLKFIDSSRNEKERNKDTVKTTVTKVMIFEFKELLVNAKMFLTLMNETMTKMK
Ga0272438_100495012	F021026	N/A	MIVFCILRQAQSRVLTLALIDSEVSAYVFMNKFFTQQYHFFLHQLIHSRRLREFNDQVALINDIIHVVEITMILDEHIEKLFFYVIELSQYLIIMNLLXLHHHVIDVNFKHNILILFFFFCLNHCCSSFIKIYDLNQQEENFSFKVNKVAFFQSRSQFTHKK
Ga0272438_100495014	F086377	N/A	MIQRFXDQRQRISIFDCDSVQISIVHAEVKFFFKFLDEKNKDDRLKVIDLNEIFAQILIQITTKF
Ga0272438_100495019	F020121	GAG	MKKLTEHLDDEMLITQIIYKFNVNFFRRSCFRYFVEDEVXLNAHNLSIAHLTVKLNDYNVDLFKIKRVFKNNSLIIELNLSTFMKIYSIFHVILLSHITSDFLSSQRQKLXKFIVIKNDKRFXYVNSILNFKHDRCYNSSLLKYYIN
Ga0272438_10049506	F008169	N/A	MFSRSFTEEHFEEFRNHFFQISDADSTKSSSAVSFIHEDDESFTKTIILLMFYEIXKTXSLVLDEETDRLYELNKQQEDEIKELKTRLQAKEITFSDFTYSERSRSQKIPDSLLFTDEKNFTXENXYEKIQNKLEINVNLFSNEXVKLSYIHSRLFNDAVEITQARCERDCVNLYRIIDDFLKELAQLFDNSNKKVNFHRKYYNLIQEFKKFNEFYTQFQRLSFYLNYYKKQLIADLKDKIHFHLXFIXVDQLVQSDFLKEIRFYLIHLNNDQCVIXEIKNKIKRVNNLFKTIFHKVTVVTQSVDHLKSDQLKSRDAILTSVKEADILVESCFIYHKFDHSFKECFDRSTRINAVNNEYDCFDFNSNFDSKN
Ga0272438_10049509	F080690	N/A	MKLSYNLLINDERAVKQFTQSVIENSVEIFRVMHELQNQVQQHDVIISFLFIVFSSSIYIKLNSQFLAMITQIIAQILNNQSLFIIHLSANSVAVFITSRFKKLFDIFKYEKNKDQLNAXKQSLIQRMNMNDDCYLFYQVKIIYVESRLIIDKKTHNLMSQYXVNDLCVIFIFADXQHKLHHYCNNSFKTEDAHLYLRETLKQDMNNFVNYYNLFYQKKECFLMKNFSLIDCLKRNVNYFTQVIVFFXRNFNEIRSFIFY