NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1004936

Scaffold Ga0272438_1004936


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1004936 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15479
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (36.84%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Helotiales incertae sedis → Cadophora → unclassified Cadophora → Cadophora sp. DSE1049(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F064252Metagenome128Y
F065269Metagenome127Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100493612F104136GAGMICSIRSVQIFNEQHLMNKSSIXMNLLTSACKLMFYXRNXMLDQFSKHXXLKSLILLLASXXXSRSQSHSLHERNSEYXTLTLLERSCLKKNSALNARSQNIEHATVLNQLRYTKSQRIXKTIYSRQSSDXERHAHILLHQYAQXLVXFQVIYYERHLE
Ga0272438_100493615F065269N/AMTRSTESESVSIAHYELQNARRESLLSYNRVASEEEGLNIMLNIEEKNMNALLFNYKMIKISINEELNA
Ga0272438_100493617F000597N/AMKDVLISSMMSMSDDSFASESLTIEYVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIFYDQLQIESLTLIKAKSIQEFDDHYAKKFITHVIYLNLTVRDHMIDTAFMLITXLN
Ga0272438_100493618F064252N/ALFTLFNNDYHKSFKFLNSSVFIDEDESTXNSXRIKINNKLQTNVDHFINEIICIVYLISRLEDDAAEHIFTXYHHDTLHSYISIYELLEHLEKIYENQNKNQKCRCKYNTLRQADKLFNVFYFNFMKLFNYLNYDNCTLMNDLQNKINNRLQNALSICSKNFTLLIHLKIFLQDVNNKQXVHYQLHSECCIVIIKVTVISDKCAATSLSMTTSIIDYVKFIISFIFESARLFIIYYTCKILNHLSKNCSQNKINTSASCAFILHLHEIIISKNKENEKMSFKNSKTKN
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