Scaffold Ga0272438_1004931

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1004931
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15493
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F009580	Metagenome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10049311	F001253	GAG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRRFDDHYAKKLITHAIYSNLTVQDHMKRSVSMLITRLDQHQMI
Ga0272438_100493110	F009580	N/A	MKRLRLIDKMICIQISERDLAQRLNFFHRQRDFFIYTDDVTVVDVHDTQSEELLIXAFFSDFAXMLQFAVVTQLSLVADFLNLRNDQSLILNDDNDKT