Scaffold Ga0272438_1004390

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1004390
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16876
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041516	Metagenome	159	Y
F064254	Metagenome	128	Y
F089603	Metagenome	108	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100439013	F041516	N/A	MIQRAIYIHEAYNSSFKDHKIIHEKENFSNIKKMLHMSKESILVEDFNLHHFT
Ga0272438_100439024	F089603	N/A	MYIDASQIQKKIAKIETEIETAVIFTHELVRCSKATSVSGKIIIMKAKLQAISDAIVMCSEKALKNSEI
Ga0272438_10043904	F064254	N/A	MQELYELVSSLFLLSFIXFFDDIIVLNXFSMLVESIIQIIAVITLLISRSFFKFMMFSSYCIIFHSVFHLKHVNKTCLIDIQSLLHLHVVVVILNTHLSCRNXLKSIFLMRSCVNNALXNFAXFLCSCRC
Ga0272438_10043905	F102180	GAG	LTLVIIHHDKLKELVAKAKHFADVVTVNQECHEKIYKVYSDSQTSLKTVKAMISTKDQTCLQXVQIVHESI