Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1004374 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1004374 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16920
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (17.39%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16920

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (17.39%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F080690	Metagenome	114	Y
F087979	Metagenome	109	Y
F087980	Metagenome	109	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100437413	F087980	N/A	MKSLHNFSIDDEHAVEQFAQSVIENSVEIFRAMRELQNQVXQHDVIILFSFIILSFSVYIKLNSQFLAMIAQIIAQILNNQSSFIIHLSANFVAVIIASKFEKLFDISEYERNKDQLNAXEQSLIQRMNMNDDHYFSY
Ga0272438_100437414	F087979	N/A	MKEKNENSTFIYINXAESRLDSSSIDLRLQKFAHMTEIIKTKLLKLD
Ga0272438_100437419	F080690	N/A	MKLSHNLLIDNERAVEQFTQSMIENSVKIFRVMQELQNQVXQHDVITSFSFIIFSSSIYIKLNSQSFAIIAQIIAQILNNQSSFIIHFSANSVAVFIAFRFKKLLNIFKYEKNKDXLNAXKQSLIQRMNVNDNHYLSHQVKIVYVKSXLIIDKKTHNLMNQYXVNDLYIIFIFADXQHKLHHCCDNSFKTENAHLYLREILKQDMNSFADYYNLFYQKKEHSLMKDFLLIDCLKRNVNYF
Ga0272438_100437422	F021026	N/A	MIVFYILRQAQSKVLTLVLIDSEVFAYVFMNKFFAQQHHFFLHQLTHFHRLXEFHDQVALINDIIHVVEITMILDEHIERLFFYVIELNQYFIIMSLSXLHHHVIDVNFEHNILILSFFFCLNYCCQFLVKIYNFNQQEENFSLEVNKVAFLLSRSQFAHKKQLNSXITHKKQFSLQIIHKKQFSLQIIYKKQFSIQFTCKK
Ga0272438_10043748	F087979	N/A	MKEKNENSTSIYMNXAESRLDSSSIDLRLQKFAHMTEMIETELLRLN
Ga0272438_10043749	F020121	GAG	MKKLTEHLCDEMLIVQIIYEFNVNFFHRSCSRYFVEDEVXLNARNLSIARLAVKLDDHNVDFFKIKRVFKNNSLIIELNLSAFMKIHSIFHVILLSHITSDFLSNQHQKSQEFVVIKNDERFXYVNSILNFKRDRHYNSSLLKYYIDXEDHFSTXKSFHLLNNCEQALNEYHFVNSVAEESHVLSCVMSQCQCQEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1004374

Overview

Ecosystem & Geography

Associated Families

Sequences