NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1004318

Scaffold Ga0272438_1004318


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1004318 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17083
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036035Metagenome170Y
F038008Metagenome166Y
F100079Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100431817F038008N/AMKETLKQMKMNXNHFYTVIFXSKSSKIVIVANKKMSIKQHNLNMFTLKQKVYLNDNDSRNDVTMIMMRMNXELNKRLRELTLIITHHDKLKELIARIKHLADVVTANQECHEKIYKVYNDNQTSLKTVKVMISTKDQTRLQQV
Ga0272438_100431818F036035N/AMKDRMKDNAMQREHHELEKASRNHECNDSDHSNNTLNKHTESISDCDIIKKSDERKRK
Ga0272438_10043183F100079N/AMFKYKHFICEXYADEKTLLKEEKHKRVSKEXLNYIVXLKV
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