Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1003850 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1003850 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18592
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (88.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18592

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (88.89%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F016760	Metagenome	244	Y
F029944	Metagenome	186	Y
F036995	Metagenome	168	Y
F074200	Metagenome	119	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100385010	F029944	GAGG	MDHGTGSALAYTVDNQGRVLCVREATAVDATARADAPPPVALWTLVAPLTWEPVQRLLAWGAREGMTAAELLDTCRATTHPTTRRRRSAR
Ga0272438_100385011	F036995	AGGAG	MTNAARDERAMAPYDWTHTSGPEGPVFTDEAPPLDPALDQKVTYYTREPDSFMPDDLRWQPITDPAEIATIEAALARGIDPPYEVWMDQAPAALAPGDLTPIGEDATAYYAWEQTGPAVGDGQLYEVTDPVVTTAYAEAQPEPHGVEIVNPADYYDAAWAADATTLDPAVYDARIDALAATGATWLEVESAGDGFALGRYAAGPIERDTNGWEPVRIADGPDNSPSGNAYPDEATARHAAVAYNSADLAGARLDLDLAPVAILDRDLTPVLDL
Ga0272438_10038503	F074200	AGGAGG	MARNSQTALYINDPVKIVAGVFTIRQATYVAGIVVLTYGLINATSRLPYGQSGLGQLHILLIVGLPALLTLLVMTFAGSGTVEPYARQFTGYLWRTLLATPRRLAYRMATLARHLGAARHAPALVYGPVLVADGIAAMLPDAGTAPDVGTTPDATASRAVRPLRAPYVAPVVMTTPVARTQRARLLAWLTAHPCVTDEQIAEGTGMNPSAARPRRRELVEAGLVRKVDMDGRTRAGRRAARWVAVGTVGEVVTHGAD
Ga0272438_10038506	F016760	GGGGG	MKRRLQRAARAMGRGLYVLALPKTVRRSTDELRQVEMSPALGLVLRLAALLVLVGTVLAVHAVGHPLLGLARAALLLVGAVVILALSGALAPQGRLLGRLLLSYAKRENARRGLTWRGRLFRALARRLEPAISEKEKGKTNGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1003850

Overview

Ecosystem & Geography

Associated Families

Sequences