Scaffold Ga0272438_1003507

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1003507
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19866
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (15.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021026	Metagenome	220	Y
F038009	Metagenome	166	Y
F055319	Metagenome	138	Y
F080690	Metagenome	114	Y
F086377	Metagenome	110	Y
F087979	Metagenome	109	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100350710	F086377	N/A	MIQRFXDQRQRISILDCDSVQILIVHAEVKFFFEFLDEENRDDCLKATDSNEIFAQIFIQITMKF
Ga0272438_100350716	F094624	GAG	MKHYLXVFINYMQNNXAKXFSEVKFIVNNASSLITLTSFFLINLNQILRLNFKFSEFLLKNLTSQAXNKLINVEEFIKKMKKLTEHLRDEMLIAQIIYEFNVNLFRRSCFKYFVEDEVXLNACNLSIAHLVVKLNDCNVDLFKIKRVFKNNSLIIELNLLTFMKIHSIFHIILLNHITSDFLSSQHQKSQELIIIKNNKRFXYVNSILNFKHDKHYNSSLLKYYINXENHFST
Ga0272438_100350717	F087979	N/A	VKEKNESSTFIYMNXAESRLDSSFIDLRLQKFMHMTEMIETELLRLD
Ga0272438_10035072	F080690	N/A	MKLFHNLLINDECAVEQFTQSMIENSVKIFHAMQELQNQVQQHDVIILFSFIILSSLIYIELNSQSLVMITQIIAQILNNQSLFIIHFFANSVAVFITFRFKKLFDISEYEKDKDQLNAXKQSLIQCMNVNDDHYLSHXVKIIYVESQLIIDKKTHNLMSQYXINDLCIIFIFADXXHKLHHCCNNFFKTEDIHLYLHETLKQDMNNFVDYYNFFYQKKEHSLMKNFSLIDCLKRNVNYFTQVIIFFXXNLDETQSFIFHQXV
Ga0272438_10035073	F001951	GAG	MTMTKLKFIDSSRNKRERNEDIVKTIVTEMMIFEFKKLLVNAKTFLTLMNETMMKMKQD
Ga0272438_10035074	F055319	N/A	MIKVRVKRLKLVNKIICIQISECDLVQKLNFFRKQQDFFIYIDDITVINVHDMQSEELFIXAFFNNFA
Ga0272438_10035075	F021026	N/A	MQQHHFLLHQLIHSCRLQEFDDQVTLINDITYVIEITMILDEHIEKLFFYVTELNQYFIIMNLSXLHHHVINVNFEHNILILSFFFCLNHCCLFLVKIYDLNQQEENFSFKVNKVAFFQSCSQFTHKK
Ga0272438_10035079	F038009	N/A	MSSMIKASSFQLNYVKLYRRLIELICSRNNRSSKEKRILTLDFXXVFFLNNLKNTTKSFLFQTRDKTEXSLFLVNELNISXLLMSERKVILLLVSRRKTELLLASELKTELLFVSELKTELLLLSEXETKLLLASELTSAICKEXQRQILALLAINISNIH