Scaffold Ga0272438_1003375

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1003375
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20355
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008598	Metagenome	330	Y
F042663	Metagenome	157	Y
F058564	Metagenome	134	Y
F074201	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100337511	F008598	GGCGG	MVHLHADDTTDDALLAHVTLTTDYVTADDVGPLVAALHAVGVTVERHTFLPVRGEEQHPWGVLLLAASGPPQPLARLVVPATAPAGVAPALAAALEIGQRPAPATLQLKAAGVFVSIRGQDILDITQALDGLPAQFARLDTRREERRLVYSEGAWRIDP
Ga0272438_100337520	F074201	GGAGG	MDHIDITPTPEACRQIARLFLAQRADAEALAARAARAVDDLDATDDDALAPWGRRLLASAFAALHDAEQARVRHMDEGVEALGLYADADDREGSDDAP
Ga0272438_100337524	F042663	AGGA	MTSQIIPALHLAASIPSIPPRPAIALYDGDVSVTTTFRPLDPLSATEVVASLDLPDATGLLNLLDATITRLIAYRDAYQQAMTANDQPVMDDDADPAPPRAPLPLPVPWYAW
Ga0272438_100337528	F058564	AGGAGG	MTPIGYTLHGHPLCLSCLAGDDALILAGVAATHDGQSHAADVAPIHPGDLGDLDDGASCAGCGLPLVAPLEPGIVWTCPACGSADLHAFYSERRACRVGARDDTGDPADAEPWPSYADDEFVDIDPATFAFACDACDTHGITPHKGGRTHALGHQQAA