Scaffold Ga0272438_1003258

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1003258
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20806
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F004755	Metagenome	424	Y
F059496	Metagenome	133	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100325821	F059496	N/A	LIFRNNYNXILRIQKKIDTKASIYVMFKDCARLERNVFVTXEECDVDEQDVDERKKGXKRKRMLSYI
Ga0272438_100325822	F081945	N/A	MFNYSFTEKCFEEFQNHFSQISDADSLKLRTKLSSAASFIHEDNELFAEMIILFMFYEI
Ga0272438_100325823	F004755	AGAAG	LKDKIHSHLXFIXVNQLVQSDSLKEIRFYLIHLNNDQRVIQEIKNKIKCVNDFSKTIFHKVTVIIQSVNHLKFDQLKSRDAILISVKEADMLVESCFICYKSNHSFKECLDQFTRINAVNKKYDRFDFDSNFNSKN
Ga0272438_10032585	F001253	N/A	VTFIKDLMKDVLISSTMSSSDDFFALKSLTIECVLSSNEINYSLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLIIHAIYLNLTVQDHMKRFVFMLITQL