Scaffold Ga0272438_1003244

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1003244
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20878
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (38.10%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F023763	Metagenome	208	Y
F038009	Metagenome	166	Y
F048018	Metagenome	148	Y
F052973	Metagenome	141	Y
F080690	Metagenome	114	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10032441	F002432	N/A	RMSFDSDTTDYETTRERLEVRKADDIVIRMKELLNFDRQQLKKTKLIIEVQINKHRRNIIYEVDDXVXLSSRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLRLSVSMKHLHSMFSSKLLRPYSEDSLSEQHSESLRSINIKDDEHXEIDDILNFRRYRGRIQYKVKXTDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSNKPR
Ga0272438_100324410	F048018	GAG	MIRRRSLFKLSTYFLSXKYRXFLCSLHSTKEILLXYHALLQSASIIXTANLSLILIYFHNVXVRMSAKFSSRFRVSXSSXDLMFSTSNSSISRFMKTRICKNVEITENRCNXTEFKVMICDXSFMTLMLKTSKVRFSTISRFKTXIFRIVXCXYXCQELNVFLFLKRSSEQHVKAFNLSLILSRX
Ga0272438_100324412	F038009	GAG	MIKALSFQLDYIKLYKRSIELICLKDNRSFKKKRILTLNFXXVFFLNDLKNMIKSFLFQMRDKTERDLFLVNELSINXLFMSKXKIILLLVSRXETKLLFMSELKTELLLVSELKTELLLSNEXETRLLFASELKTELLLLSE
Ga0272438_100324414	F023763	GAG	MSFQNCLMLILMSRIEYIFLFKEIFXAMCQSIQLIIDLVKMISDAIVECKQKFALTSLMMIQLLSXHEILKIFVIRDHFDRIKRVFKLXSSFFKSMNNDHEFFIINLVVTLNXVMLLQKVSNXMKNLIFIILKENVFEHIVQSIDFYHNLVIXIIVTKNNLESEDFFKNVECNLTFLKSDKEYIFSDEMSERSSYSTIVINEFSIEVREI
Ga0272438_100324418	F094625	N/A	MKSSYNLLIDDERAVEQFAQSMIENSVEIFHAMRKLQNQVRQHDVIISFSFIVLNSLIYIELNFQSFAMIAQIIAQILNNQSSFVVYFFANFVAVFITSKFEKLLDISKYEKNKDQLNAXEQSLIQRMNVNNDHYFFHRVKIIYVESRLIIDKKIHNLMSQYQVNDFCIIFIFTDX
Ga0272438_10032442	F052973	N/A	MFRDCARPERDVFVTREEYDVDEQDVGERKECWERKRVLSHI
Ga0272438_10032446	F080690	N/A	MKSSHNLLIDDEHAVKQFTQSMIENSVKIFRVMQKLQNQVQQHDIIISSSFIILNSSVYIELNSQSFVMIVQIIIQILNNQSLLIIHFSANFVAVFIASRFKKLLDISEYEKNKDXLNAXKQSLIQRMNMNDDHYFFHRVKIIYVESXLIIDKKTHNLMNQYXINNLCIIFIFANXXHKLHHCCNNSFETENAHLYLRETLKQDMNSFVDYYNFFYQKKECSLMKDFSLIDCLKRNINYFTQVIIFF
Ga0272438_10032447	F001951	N/A	MTMTKLKFIDSSRNKKEKNEDTVETTVTEMMIFELKKLLINAKTSLTLMNKMMTKMK