Scaffold Ga0272438_1003169

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1003169
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21196
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F059496	Metagenome	133	Y
F074203	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100316911	F008735	N/A	VNLLIYDESXLDINDLDLMKEITIIVYIHALYQTLLLCIQSIFVSFILRYVEKLLESKSDNDSDRICKRMNDEKRLIIQDLCDDLSYHRERLRIQLYIDXRTENDEXEXNNNIMLSNLILKLLHYAKDLNXIFNHTLSELFSNMLIIDXKIVRXLHLSERITR
Ga0272438_10031692	F059496	GAG	LIFRNSYNXILRIQKKIDTKAFIYVMFKDCARLERNVFVTXEENDVNEQDVDERKECXERKKIVESYFN
Ga0272438_10031693	F074203	N/A	MFNHSFIKKCSEEFQNYFSQIFDADSLKSLSVASFIHEDDKSFAEIIILFMFYEIXKTXSLALDEETDQLYELNKQQEDKIKELKIKLQAKENTSSAFIYSERSRSQKISDSSLFTDEKNFIXENXYEKIQNKLKININLFFNEXVKLSYIHFRLFNDTAEIIQTRCKHDYINLYKIVDDLLKKLAQLFNDLNKRVNFCRKYYNLIQEFKKFNEFYT
Ga0272438_10031699	F009580	N/A	MIEVKMKRLMLVDKMICIQIFERDLAQRLDFFQIQXDFFIYADDVVVVDVYNMQSKELLIXTFFNDFAXMLQFAVVAQLSLVADFLDFRND