Scaffold Ga0272438_1003035

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1003035
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21793
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036994	Metagenome	168	Y
F044226	Metagenome	154	Y
F086377	Metagenome	110	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100303518	F087978	N/A	MFSLKLLQSYSEDFLSEQHAEFLRFIIIDDDDNEYXKIDDILNFRRYXDXIQYKIKXKNLDRNDEXYYVDKDEFDDFKKVLNEFHMLYSRKSR
Ga0272438_100303519	F044226	N/A	MKFSNNFNIFLIISMISFYFNKDFHSXMSFNSDTTDYEITCERLKARKADDIVIQMKELLSFDH
Ga0272438_100303520	F036994	AGCAG	MXNKVIIEADSLVNLLIEKIDYQLVIEADSLVACEREVDRFTDR
Ga0272438_10030353	F086377	N/A	MIQRFXDQRQRISILDCDSVQISIVHAEVKLFFEFLDEKNRDDCLKATDLNEIFAQILI