Scaffold Ga0272438_1002880

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002880
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22544
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F040408	Metagenome	161	Y
F048019	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100288011	F040408	N/A	MYDYKLIFDIHIENDAMKEEVSAAKECIEMLQNMQNTLMK
Ga0272438_10028802	F001951	N/A	MMIIMKLKFINSLKDKRERDEDTVETTVTEVMIFEFKKLLINAEMFLTLMNKMMIKMK
Ga0272438_10028806	F048019	N/A	MNEHAFKLFIAEDFTKALQDESTMYAFVMINIVEESIVEHQVKVMNNMMSYITNALEMQTLLVELKEYKDVFLTESANKLSLHEDHDHAIEITAKSLYESLYNLSN