Scaffold Ga0272438_1002829

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002829
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22836
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.90%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F040408	Metagenome	161	Y
F057012	Metagenome	136	Y
F065269	Metagenome	127	Y
F074204	Metagenome	119	Y
F100079	Metagenome	102	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100282917	F100079	N/A	MFKYRHFIHKXYVDEKTLLKEERHKQVSKEXLNYAVXLKV
Ga0272438_100282918	F008735	N/A	VSLLIYDESXLDIDNLDSIKEVMIIVHVHALYQTLLSCIQLIFVSLILKYVKKLLESKSNEDSDRIYREMNDKRRLIIQDLCDDLSYCREKLRIELYIDXRIENDEXEXDDDIMLSNLILKLLHYAKDLNXIFDHTLSELFNSTLIVNQKIVRXLHLNEKITRRDFNIXKRCRKCRSFIMSETELN
Ga0272438_10028292	F040408	N/A	MYDYKSIFDIYIKNDTMKEEVSAAKKRVEILQDVQNTLMQ
Ga0272438_100282921	F074204	N/A	MIVFYILCQAQSKVLTLALINSKVFAYVFMNKFFAQQHHLFLHQLIHSCKLQEFDDQVVLIDDITHVIEIIMILDEHIKRLFFYVIELSQYFIIINLS
Ga0272438_10028296	F065269	N/A	MTRSTESKSVSIARYELQNARKESLLSQNRTASEEEDTNASLNTEEKNMNALLFDHKMIKISISIELNA
Ga0272438_10028298	F104136	N/A	MIFSIRLAQIFSESXSTNELXIXTNSSTSACKSTFDXRNXMLDQLSRHQRLKSLALLLASQXXSLLRSQLQSLHERNSEYRTLTLLERSCLKKNFASNARSQNIEHMIVLSQLRCTKSQQIRKTICLRQSSDXERHAHILLHQYAXXLIXFQIVYCKRHLE
Ga0272438_10028299	F057012	N/A	MLDDSFDFKSFIVNVILSSLKKIFRFLALIDIEVTDMTFIDDSLISELCECFDIQSISLFKSKSIRSYDKIFDRRSITHALYISVTIQEHKNEMMFLSITHLDQHKIIIDNLXLKRNQILINSANNXLISSSNIQILKLIVSEASSQSAFHQLESSEICEIKRKNLKSMSTIILKQTTNSKSVSRFIESALIRKQST