Scaffold Ga0272438_1002806

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002806
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22953
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F038009	Metagenome	166	Y
F044227	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100280616	F021026	N/A	MIIFCILRQAQSRVLTFALIDSEVFAYVFMNKFFAQQHHLFLHQLTHSRRLQEFDDQVALINDIIHVIEITMILDEHIEXLFFYVIELSQYLIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHCCQSLVKIYDLNQQEENFSLEVNKVASLQSRSQFAHKKQLSSXITHKKQFSLQIAHKKQFSTQFACKKQFSFSFAXKK
Ga0272438_100280617	F038009	N/A	LIELICSRNNRSSKEERILTLDFXXVFFLNDLKNTIRSFLFQTRDKIERDLFLVNELNINXLLMSEREIILLLVSRXKTVLLFSNEXRTRLLLASELKTELLLSSEXKTRLLLASELKTELLLSSEXETKLLLASELKTELLLSSEXETKLLLASELSAELLLVSNL
Ga0272438_100280621	F020121	GAG	MKKLTEHLRDEMLIAQIIYEFNVNLSCRSCSRYFIEDEVXLNACNLSIAHLAVKLDDRNIDFFKIKRVFKNNFLIIELNLSAFMKIHSIFHVTLLSHIASDSLSNQRQKSQELIVIKNDERFXYVNSILNFKRDRCYNSSLLKYYVDXEDHFSTXESFHLLNNCEQTLNEYHLVNSVAEESHVLSCVMSQCQCQEL
Ga0272438_100280625	F044227	N/A	MXLQIKSSNDEACTHALLKLIASAIKNVTRCXLFKLSNNCCHHKESQSDNEDDDENEALEAI