Scaffold Ga0272438_1002724

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002724
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23419
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (18.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F044227	Metagenome	154	Y
F083460	Metagenome	112	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100272413	F100079	N/A	MFRYKHSIHEQYADEKTLLKEKKHKQVNKEXSNYAVXLKV
Ga0272438_100272418	F044227	N/A	MXLXLRSSDDETCINALLELIASAIKNVMKHQLLELLNNHCYHEESXSSCKNDDENEASEAI
Ga0272438_100272421	F083460	N/A	MQLXMKSSNSQAYSDALLELNASSNKYITRYQLHKLLNHHLNHEESQDNSENDDENEAAEAV
Ga0272438_10027247	F010214	GAG	MRVSVLFDYDASSLLCSSLTIFYTTMSRFDSRFEDERRFLCIRDARDCNVRRAVFSYSMIVIYXAEKYVMKERYTRXEDRVXLYXVTLFFSXFDLCHVDVEXTVSINMQSQSFDVXLXSMKENAFXSFSXALDFSCE