Scaffold Ga0272438_1002575

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002575
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24199
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (24.14%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F005901	Metagenome	386	Y
F021026	Metagenome	220	Y
F021896	Metagenome	216	Y
F071806	Metagenome	121	Y
F080690	Metagenome	114	Y
F086377	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100257510	F001951	N/A	MIMTKLKFIDSLKDERERDEDTVETTITKMMIFELKELLVNAETFLTLTNETMMKIK
Ga0272438_100257511	F080690	GAG	MRELQNQVQQYDVITLFSFIVLSSSVYIKLNSQSLAMIIQIIAQILNNQSSLIVHLSVNSVAVIIASRFEKLLDISEYEKNKDRLNAXKQSLIQRMNMNDDHYFFHRVKIVYVESRLIIDKKIHNLMNQYXVNDLCIIFIFADXXHKLHHCCNNSFKTEDAHLYLRETLKQDMNNFVDYYNLFYQKKECSLMKDFLLIDCLKRNVNYFTQVVVFF
Ga0272438_100257519	F071806	N/A	MKLQSQIIILDSVQLHLFSIISAFSQILALMNLEIEEFNVENIKSQLDQDTLNLDEDSADTFTQTLXKQVKINDKFAV
Ga0272438_100257520	F021896	N/A	MKNNFESEDFLKNVECNLTFLKSDKEYIFSDEMSERDSYSTIVIDKSSIEVREI
Ga0272438_100257522	F086377	N/A	MIQRFXDQRQRISILDCDSIQILIVHTEAKFFFEFLDKENKDDRLKVTDLNEIFAQILIQITTKF
Ga0272438_100257523	F021026	N/A	MIEFCILRQAQFKVFTLTLIDSEVFAYVFMNKFFTQQHHLLLHQLIHSRRLQEFDDQVTLINHIIHVVEITMILNEHIERLFFYVIESSQYLIIISLSXLHHHVIDVNFEHNILIFSFFFCLNHCCSFLVNIYDLNQQEENFSFKVNKVAFFQSRSQFTHKKQFSLQIIHKKQFSLQIIHKKSLSTQFAHKK
Ga0272438_100257526	F005901	AGAAG	MNDKLIVNVNQFDNETICIVYMLSRLEDDAAEHIYAXRRHDSSHSYYSIYELFEHLKEIYDEVNKNQKCRREYNALRQADKFFNVFYFDFIKLFSYLEYDDRTLMNDLQNKINNRLQNALSVCLEDFTSLHXLKIFLQDVNSKQRVNYQLRSERRTVIVKVTVVPDKRATTLLSAVTTSIINYVKSTIFSISESARSSIICYICKTSNHLFKNCSQLNKINISASQAFILRLHEIVISKDKENEKMSSFKNSEAKN
Ga0272438_10025754	F021896	N/A	MKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMSERDNYSTIVIDESFIEVREI
Ga0272438_10025756	F086377	N/A	MIQRFXDQRQRISILDCDSVQISIVHAESKFFFKFLDEENRNDRLKVIDSNEIFAQILIQITTKF