Scaffold Ga0272438_1002523

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002523
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24546
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F008115	Metagenome	338	Y
F020121	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100252313	F002432	N/A	MKLSDNFNIFSITSMTFFYFNKEFHLXMSFNLDTTDYKTTCEQLKARKANDIVIQMKELLNLSHQQLKKMKLIIEVQINKHRRNVIYEVNNXVXLFFRNVKIMRSCKDLKDKQLELYQIIIKAKVFYHLHLSVSMKHLHSMFSSKLLQLYSEDSLSEQHAEFFKLIIINDDNDEHXEINDILNFRCYQDXIC
Ga0272438_100252316	F020121	GAG	MKKLTEHLCDEMLIAQIIYKFNVNLFCRSCSKYFVEDEVXLNVCNLSIAHFAVKLNNCNVDFFKIKHVFKNNSLIIELNLSAFMKIHSIFHVILLSHIASDFLSSQRQKLQEVVVIKNDERFXYVNSILNFKHDKYYNSSLLKYYIDXEDHFFTXKSFHLLNNCKQMLDEYHLVNSVVEESHVLSCVISQC
Ga0272438_100252321	F008115	N/A	MLXNVYQLHDLLSSIVSNRDFQFISTMXKSLCKQLRITVSLFTVYHSKINDQMKXVNQDVERELRIYCNYMQNDXVKXISMMKFSNNFNIFLIISMISFYFNKDFHLRMSFNSDTTDYEITRERLKARKANDIVIXMKKLLSFDHQQLKKTKLIIKAQINKHKRDVIYEINDXVXLFFKHVKITRSCKDLKNKQLKLYQITVKVKVFYYLHLLISMKHLHLMFSSKLLQLYSEDSLSEQHAESLKFIIIDDDDDEH
Ga0272438_100252324	F004755	N/A	LKELAELFNDSDKKVNFHKEYYNLIQESKKFSKFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLQFVXINQLVQSDSLKEIRFYLIHLNNNQXVIXKIKNKVNLIKHVNNLSKIIFHKAVVTQSVDHSKSDHLKLRDAILTNVKEADVLVKTCFICHKSNHSSREYSDXPTRINAVNNEYDCFEFNFNSNFNSKN
Ga0272438_10025234	F002432	N/A	MQNDXAKXLSMIEFSKNFNIFLIISMISFYFNKSFHSXISFDSDTTDYKIIHERLEARKADDIVIXMKELLIFDHQQLKKTKQITEAQINKHKXDVIYEVNDXVXLFFRNMKTIRSCKDLKNKQLKLYQIIANVEIFYRLCLSESMKRLHSMFSSKLLRLYFNNLLSEQHSESSKSLTIENDEHXKIDDILNFRCYRDXIQYKIKXTELNQDNEXYYVNKNEFKNLKEVLVEFHKLYSNKSY