Scaffold Ga0272438_1002489

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002489
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24735
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (36.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009377	Metagenome	318	Y
F042102	Metagenome	158	Y
F048019	Metagenome	148	Y
F051591	Metagenome	143	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100248912	F048019	N/A	MRHACNSFNVNEHAFELFFAQAFMKALQDESTVYALVIINVVEELIIEHQVRAINNVMSRITNAFETQTLLVELKEYKDVFSTESADKLSLHEDHDHEIEIIAESSYESLYNLLNTELATLR
Ga0272438_100248923	F009377	N/A	MTRSTESESVSIAHYELQNARRESLLSQNXTASEEEDMNVSSNTEEENMNVLLFNHEMIKISISTELNAXISAHEANDLVVFIKYICQQHDIEIKIHNDMIQMLNDVNKINIKLKVTQTTLNAVXMHLQKEMKKKNVIIHHLEVTSSXLSTLISKDXFSKSIKLSDSLLFENSKQNVNNXLFXMRNKLKMNKNHFSIKEMKIAYVKSRVSETMIKHIALRMRNMITNLFLEAEEILSIINKMYDDLN
Ga0272438_10024893	F051591	N/A	MLDAIALYLVYRSSRVISLRIVTTDLDLLPCASRKGKTNSDLIRNAVLLXNNVVPCAIFERKRVRFRFLRQYAVFCAVLKSIDDLFSSCEFALRFINQITVXIDDSFFCIDELSFRRRFWPAWARKILIFDFXLATQSPLKLLSRIEACFDRTIVLYNLPIDLVYHMLR
Ga0272438_10024897	F098340	AGAAG	MIKVAVYXTLVKNKKIKIFSLIISEINKALSSVEDFAELNEMTSVMSLNELKKKLSIIYHDFLNVFDREKTTQLSLHQSYDHKIELEDKSQSSRS
Ga0272438_10024899	F042102	N/A	MLEDVNEINITLKIMQMHLQKENRNKNVIIHHLEVASSXQSTSISEDXFSKSIKLLNSSLFEDSSQNVDNXLSXMXNKLKINKNHFSIEELKIVYIESXVSEAAIKHIVSCMQDIFLNSFLEVEEVLSIINKMYDDLNHHHTTQHQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLDDFQHKISSDLQRATLNEXIMNLNKFINICMXVDVKLTELNTRSIIKASATQAARSVISTLTTQFTSSVSSXKKLRRSKLNFIQKELFKKELCFKCKKSKHRAYDCLKMTQVHKIATNLKNDLSSSK