Scaffold Ga0272438_1002438

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002438
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25071
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F008735	Metagenome	328	Y
F021026	Metagenome	220	Y
F023763	Metagenome	208	Y
F087979	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100243810	F021026	N/A	MIVFCILHQAQSKVFILILIDSEIFAYVFMNKFFMQQHHLLLYQLTHSCRLQEFDDQVTLIDDIIHVVKITMILNEHIEKLFFYIIELSQYFIIMSLSXFHHHVIDVNFEHNILILSFFFCFNHYCSSLIKIYDLNQQEENFSFKVNKVAFFQSHSQFTHKK
Ga0272438_100243812	F008735	N/A	VNLLIYDESXLNIDDFDSMKKIMIIIHVHALYQTLLSCIQSIFVFLIFKYVEKLLEFRSNKNNDRVHKEVNDKKRLIIQDLCNDLSYHHKRLRIQLYINXRTENNEXEXDDDIMLSNLILKLLHYMKDFNXIFNHTLSELFDNMLIIDQEIVKXLYLSERIIKXDFNV
Ga0272438_100243813	F087979	N/A	MKEKNENSTFIYMNXTESRLNNSFIDLKLQKFAHMIEMIETKLLKLN
Ga0272438_100243818	F000597	N/A	MKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIEFLTLNKAKSIREFNDHYAKKLITHVIYSNLTVQDHMINTA
Ga0272438_100243819	F003820	N/A	MNDLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKRXVNYQLRNERYTVIIKVTVVSDKCATSLSITTLIINYVKSTIFSISESVRLSIICYICNIFDYLFKNCSQLNKINTSASCAFTSCLHEIIISKNKENEKMSFENNKTKN
Ga0272438_10024389	F023763	GAG	MNFQNCLMLILISRIECISLFKKIFXAMCHSIQLIINLVEMISNVIVESRQKLTSTSLMITQLLNXHEILKIFMICDHLNRINKVFKLXSSFFESINNDHEFFIVDLVVTLDXVMLLXKVSDXMKNLIFIILKKNVFEYIVXSIDFYHNLVIXIIVTKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMSKRNSYSTIVIDKSFIKVREI