Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1002407 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1002407 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25302
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

25302

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F024448	Metagenome	205	Y
F028368	Metagenome	191	Y
F074203	Metagenome	119	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100240714	F024448	N/A	MSMSDNSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIREFNDHYAKKLITHVIYLNLTVQDHTIDTASMLITXLNQHQMILEKTXMNKIDLVIDMQIDFLRFSNFNPTSQKSIVLFSSHKTITKQKSLTSTHILRRLFTFVTF
Ga0272438_10024072	F010214	GAG	MRVSVLFDYDASSLPCSSLTIFYTTMFRSDPRSEDERRFLRIRDARDCNVRRAVFSYSMIAIHXAEKYVMKERRTRXEDRVXLYXVTLSFSXLGLCHVDVEXIVSIGVRSQSFDVWLXSMKEDAFXSFSXALDFSRR
Ga0272438_10024075	F028368	GAG	LCKLDEILSEENYFEKSFLIDTHLISQNQSFSLCFLINSDSVIYMIIHSNLVNKVCKKLKIQSISLTKEKLIKDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIVDIDHHEVILNKLXMNKNEILLNMRNDIIVFSNQLNTSISIFSILLNSKHSSXLRSTLFSSITQTKISMMLKRLISITVQKKSFSIQSINTASFKILLNHSKKNKIKVFALFMMNINRKITYNTQCDLNALNISSINEMT
Ga0272438_10024076	F074203	N/A	MLSHLLTEECFEEFRNRFSQISDADSLKSQTKSSSATSFIHEDDESFIETIIFLMFYEIXKAXSLALDEETDRLYKLDKQQEDEIKELKTKLQAKENTSSDFIYSERSRSQKISNSSLFTDEKNSTXKNXYEKFQNKLEINVDLFSNKXVKLSYVHFRLFNDAAEIIQSRREHDYVNLYKIIDDLLKELAELFNDSNKKVNFRKEYYNLIQESKKFSKFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLQFIXINQLVQSDSLKEIHFYLIHLNNNQRVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1002407

Overview

Ecosystem & Geography

Associated Families

Sequences