Scaffold Ga0272438_1002291

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002291
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26140
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F048018	Metagenome	148	Y
F048685	Metagenome	147	Y
F070710	Metagenome	122	Y
F080690	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100229111	F001951	N/A	MMIMTKLKFIDSLRNERERDEDTVETTVIKMIIFELKELLINAETFLTLMNEIMMKMK
Ga0272438_100229113	F080690	N/A	MKLSHNFLIDDERAVEQFAQSMIENSVKIFRIMQELQNQVQQHDVIISFSFIIFSSSIYIKLNFQFLATITQIITQILNNQSSFIVHLFANFVAVFIAFRFKKLLDIFEYEKNKDRLNAXEQSLIQRMNMNDDHYFSHRVKIIYVESXFIISKKTHNLMNQYQVNDLCIIFIFADXXHKLHHYYNNSFKTENVHLYFCETLKQNMNSFVDYYNLFYQKKEHSLMKDFSLIDCLKCNVNYF
Ga0272438_100229115	F001951	N/A	MIMTKLKFIDSLRNERERDEDTVETTVIKMIIFELKELLVNAKMLLTLMNEMMMKIK
Ga0272438_100229116	F009580	GAG	MICIQIFERNLAQKLNFSHEQQDFFIYINDIIVVNIHNMQSEKLFIXAFFNDFAQMLQFAVVAKLSLVEDFLDFRNDQSLILNNDNDKA
Ga0272438_100229117	F021026	N/A	MIVFCILRQAHFKVLVLILIDSEVFAYVFLNKFFAQQHHLFLHQLTHFHRLQEFDDQVALIDDITHVVEITMILDEHIKRLFFYVIKLSQYLIIMSLSXLHHHIIDINFEHNILILSFFFCLNYCYSSFVKIYDLNQQEENFLFKVNKVAFFQSHSQFTHKKQLSS
Ga0272438_100229121	F048685	N/A	MFIDHQALISLMKDKELSRRQMRXVQKLIDFNFRIMYXSDKQNIKINALTRXADVVLRDSEDERVRYQXITILTLNRMKIADLEKNISESIYKQILETNEIDENCTLLREVIARDETQYEDIKLKNCXTQNKILYHDSQL
Ga0272438_100229128	F070710	N/A	MTKQLFLQILQYNIRKSLKIQESFLINREVRRFDIVIIQKQERNINDLQSFSSAHNFFYLVKNSFFQSRTCIYVNKCLRLDQXTVETVESNICSIRILTCNTDDEMQMLRLLNIYNLSSLFSTFTERLSTIFRLNELLKNDCKQLVVEDFNLHHSHXEKXRCFTRHMMIDTLLNVITNARLKLLLKSDTITCKTHNQFTTINLVFSSEKI
Ga0272438_10022914	F020121	GAG	MLIAQIIYKFNVNLFHRSCFKYFIEDEVXLNACNLSIAHLVIKLDDCNVDLFKIKHVFKNNSLIIELNLSTFMKIHSIFHVILLNHIASDFLSSQRQKFQELIVIKNDKRFXYVNSILNFKHDRYYNSLLLKYYINXKDHFFTXKSFHLLNNCEQMLDEYHLVNSVIEESHVLSCVISQYQCQEL
Ga0272438_10022915	F048018	GAG	MIQRRSLSELSTYFLSXKYRXFSCSSHSIKEILLXCCASLXSTSIIXAANLLLISICFHNVXVRMSAESXSRFRMSXSSXNLMFSTLNSSISRFMRARICKDAEIIKNKCNXTEFRTMICDXSFMTLMLKTSRTRFSTILRFKTXIFRIVXCXYXCXELNVFLSLERSSERRVRAFNLSLILSRX