 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1002284 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26226 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (27.03%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008735 | Metagenome | 328 | Y |
| F050043 | Metagenome | 145 | Y |
| F074204 | Metagenome | 119 | Y |
| F086377 | Metagenome | 110 | Y |
| F089602 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100228423 | F086377 | N/A | MIQRFXNQRQRILILDCDNVQILIVHAKAKFFFEFLDEKNRSNYLKVTDLNEIFAQILIQIMMKF |
| Ga0272438_100228428 | F074204 | N/A | MIVFCILHQAQSKVLILTLIDSEVFAYVFMNKFFVQQHHLLLHQLTHSHRLQEFDDQVLLINDITHIVEITMILNKHIKKLFFYIIELSQYFIIMNLL |
| Ga0272438_100228430 | F089602 | N/A | MKDEXSSFIKISLEENDDLSEIINITLQTVNQXEIFHQRMFFLLIKEIVVVNKAIHVLLQSFMKI |
| Ga0272438_100228431 | F008735 | N/A | MQFVSSICKDENDTKIIDLILTHXIVSLFIYDESXLDIDDLDLMREIIIVVHVHALYQTLLSCIQLIFIFLIFKYVEKLLKSRSNEDSDRICRKMNNEKRLIIQDLCDNLSYHHKKLRIQLYINXRTENDEQRXNDNIMLSNFILKLLHYAKDLNXIFNHTLSKLFNSMLIVD |
| Ga0272438_10022845 | F050043 | N/A | MKRRXRLRETERVINKAIIIIHSCLHFIISTTQFNXKISNVYASFTHDXCCHLRQLHITYNVIYMHYNXRXIIIQSKVSLFRVFLXRFEDFYRELLEQNHEYTSSFIKINQDINYXDQEXTHLEKKTIVMMNXQIKIKSETKIRDXIENQIXVNSETLXLCQDII |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |