Scaffold Ga0272438_1002191

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002191
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26877
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (20.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F011463	Metagenome	290	Y
F025887	Metagenome	199	Y
F065268	Metagenome	127	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100219114	F011463	N/A	MKELSIFDCQQLKKIKQIIKAQINKHKQDVIYEVNNXVXLFFRNIKTTRSCKDLKDKQLELYQITIKVEIFYHLHLLISMKHLHSMFSLKLLQSYSEDFLSEQHSESLKSIIIKDNEYXKINNILNFRHYRDRIQYKVKXTNLDRNNEXYYVNKEKFNDSEKVLNEFHRLYSR
Ga0272438_100219115	F096307	N/A	MLYIVVTQINVSLKEDVLKHKKDVDLKDVYDIKKCVYHRNLLIIRNTKKCVYLEDNRSXLEDAESHLSQIXVRFRSDLD
Ga0272438_100219121	F025887	N/A	MSDDSFDFKSFTVDIILNSLEKIFKFLALINIEVIDMTFIDESLMSKLCERFDIQSISLSKSKLIQLYDEISDXKSITHALYTLIMI
Ga0272438_100219124	F065268	N/A	MIKSIELESELVSTTCYELXNAERESLLLQNXTASKEEDMNALLNIKEKNTNVLLFDHEMIKISISTELNAXINIHEADDFIAFIKYIC
Ga0272438_100219129	F025887	N/A	MTESDILIFCFINMFDDSFNFKSFTVDIILNSLKKIFRSFALIDIEVIDIIFIDKSLMSELCECFDI
Ga0272438_100219133	F002432	N/A	MSFDSDMTDYKTTHERLEARKADDIVIXMKKLLSFDRQQLKKTKLIIKVQINKYKXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLNFYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLXLYSKDSLSEQHSESLRSVTIKDDEYXKIDDILNFRCYRDQIQYKVKXKDLDRNNEXYYVDKEKFNDSEKVLNEFHKLYSSKPR