Scaffold Ga0272438_1002187

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002187
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26941
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (22.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F013598	Metagenome	269	Y
F036994	Metagenome	168	Y
F044227	Metagenome	154	Y
F048685	Metagenome	147	Y
F057011	Metagenome	136	Y
F070712	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10021871	F036994	N/A	MIIEADSLVDLLIEEINYRLVIEADSLVAREREID
Ga0272438_100218710	F000597	N/A	MSMSNDSFASESLTTECILSSNEINYSLKSLINIKAADYLFIDEVIVQIVYDQLQIKSLTLIKAKSIREFNDHYAKNLIIYIIYSNLTVQDHIIDITSMLITQLN
Ga0272438_100218711	F005901	N/A	MIFKLEDDVAKYIFTXRCFDSLNSFTLIYKLFNNLKEIYDELNKNXKFQRKYNILKQADKSFNVFYFNFIKLFNYLDYDNXILMNNLQNKINNRLQNILSICSKNFTSLFRLKKFLQDVNNKQRVNYQLHSKRCTVIIKVTVISDKCITLLLMIISIINYVKSTIFSISESVKSSIICYICKISNHLFKNCSQLNKINIFAS
Ga0272438_100218712	F044227	N/A	MXLQLRSSDNETGTHVLLELIASAIKNAMKRQLLELSNNHHYYEKSQSSCKNDDENEASETI
Ga0272438_10021873	F013598	N/A	MNFIINLSDSYNYNAILTVICRLSKERHYILCIIDDENITVKKTAEMLLQXVY
Ga0272438_100218731	F057011	GAG	LCSQIKVLLKENYFEKSFLINASLISQNNSFSLCFLIDSDFVVYMLIYDKLVNKVCQKLEIQFISLVKEKLIXDYDEKLTRKTITHKILLNLMIESHKKLTMSMLIADIKHHEAILSKFXMNKNEILLNMRHDTIVFSDQLNILILIFSILLNTKHSSXSXSTSIFSAAHNKISKMLKHSVSII
Ga0272438_100218732	F070712	GAG	MSDIKEKKFLNKVRKQVIFAEKRDSLNLYRKIEITTFVDHSKSYDAILTSVKNINLQAEICFICHKSDHTSRKCSDQSRVNVLKDDEFNHLNSESDSDSKN
Ga0272438_10021875	F048685	N/A	MYQLSKQNIKINALIHXINVMLKDLDDERIYYQXIIILTLNXMKIADLKKNISESIYKQILEINKIDENCMLLREVIARDET