Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1002124 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1002124 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27561
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (21.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

27561

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (21.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F020121	Metagenome	225	Y
F021216	Metagenome	219	Y
F023763	Metagenome	208	Y
F048018	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100212419	F021216	N/A	MKSRMKSNAMRKEHHELEKAFRNHERNDDDHLNDTLNEHTESISSCDIIEELNEREKE
Ga0272438_100212423	F020121	GAG	MFQARNKLINVEEFIKKMKKLTEHLRDKMLIAQIIYKFNVNLSHHSCFKYFVEDEVXLNAYNLSIIHLVVKLNDHNVDLFKIKRVFKNNFLIIELNLSTFMKIHSIFHVILLNHIASDFLSSQHQKSQELIIIKNDKRFXYVNSILNFKRDKCYNSSLLKYYINXENYFST
Ga0272438_100212425	F048018	GAG	MIXRCSLFKLSMYFLSXKYKXFSCSSHSTREILLXCHASLQSTLIIXAANLSLISIYSHNVXVRMSAKSLSRFRMFXSSXDLTSSTLNSSIFKFMKAKICKSAEIIENRCNXTESKVMICDXSFMILMLKTLKTKFLTILRSKTXVFRIVXCXY
Ga0272438_100212426	F023763	GAG	MSFQNCLMLILMSKIKCISLFKEIFXATCQSIQLIINLIKMISDAIVEFRQKLTSTSLMTTQLFNXHEILKIFVIHDHLNRIDKIFKLXLSFLKSANNDYEFFIVDLVVTLNXIMLLXKVSDXMKNLILIILRENVFKYIV
Ga0272438_10021249	F009580	N/A	MKRLRLVDKIICIQISERDLTQKLNFFCEQQDFFIYIDNIIVVNVHDMQSEELLIXAFFNDFARMLQFAVVAQLSLVADFLDLRNDQSLILNDDNDEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1002124

Overview

Ecosystem & Geography

Associated Families

Sequences